Update to structure

{{ cookiecutter.repo_name }}/README.md

@@ -3,18 +3,50 @@
 
 {{cookiecutter.description}}
 
-Organization
+Project Organization
 ------------
 
+    ├── LICENSE
+    ├── Makefile           <- Makefile with commands like `make data` or `make train`
+    ├── README.md          <- The top-level README for developers using this project.
     ├── data
     │   ├── external       <- Data from third party sources.
-    │   ├── interim        <- Intermediate data that has been transformed goes.
+    │   ├── interim        <- Intermediate data that has been transformed.
     │   ├── processed      <- The final, canonical data sets for modeling.
     │   └── raw            <- The original, immutable data dump.
+    |
+    ├── docs               <- A default Sphinx project; see sphinx-doc.org for details
+    |
+    ├── figures            <- Graphic output from modeling to be used in reports
+    |
+    ├── models             <- trained and serialized models, model predictions, or model summaries
     │
-    ├── notebooks          <- Jupyter or Beaker notebooks. Naming convention is a number (for ordering),
+    ├── notebooks          <- Jupyter notebooks. Naming convention is a number (for ordering),
     │                         the creator's initials, and a short `-` delimited description, e.g.
     │                         `1.0-jqp-initial-data-exploration`.
-    ├── references         <- Reports, data dictionaries, manuals, and all other explanatory materials.
-    └── src                <- Source code. Possible subdirectories might be `scripts` or `API` for
-                              projects with larger codebases.
+    |
+    ├── references         <- Data dictionaries, manuals, and all other explanatory materials.
+    |
+    ├── reports            <- Generated analysis as HTML, PDF, LaTeX, etc.
+    │   └── figures        <- Generated graphics and figures to be used in reporting
+    |
+    ├── requirements.txt   <- The requirements file for reproducing the analysis environment, e.g.
+    |                         generated with `pip freeze > requirements.txt`
+    |
+    ├── src                <- Source code for use in this project.
+    │   ├── __init__.py    <- Makes src a Python module
+    |   |
+    │   ├── data           <- Scripts to download or generate data
+    │   │   └── make_dataset.py
+    |   |
+    │   ├── features       <- Scripts to turn raw data into features for modeling
+    │   │   └── build_features.py
+    |   |
+    │   └── models         <- scripts to train models and then use trained models to make
+    |       |                 predictions
+    │       ├── predict_model.py
+    │       └── train_model.py
+    |
+    └── tox.ini           <- tox file with settings for running tox; see tox.testrun.org
+
+

{{ cookiecutter.repo_name }}/src/make_dataset.py

@@ -1,23 +0,0 @@
-# -*- coding: utf-8 -*-
-import click
-import logging
-
-
-@click.command()
-@click.argument('input_filepath', type=click.Path(exists=True))
-@click.argument('output_filepath', type=click.Path())
-def main(input_filepath, output_filepath):
-    logger = logging.getLogger(__name__)
-    logger.info('making final data set from raw data')
-
-
-if __name__ == '__main__':
-    log_fmt = '%(asctime)s - %(name)s - %(levelname)s - %(message)s'
-    logging.basicConfig(level=logging.INFO, format=log_fmt)
-
-    project_dir = os.path.join(os.path.dirname(__file__), os.pardir)
-    dotenv_path = os.path.join(project_dir, '.env')
-    dotenv.load_dotenv(dotenv_path)
-
-    main()
-